Amphithéâtre Marguerite de Navarre, Site Marcelin Berthelot
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The marine biosphere is dominated by phytoplankton organisms, which synthesize organic matter from dissolved nutrients such asCO2, nitrate and phosphate ions. The average stoichiometry of this photosynthesis reaction is expressed by the ratios introduced by Alfred Redfield in the late 50s. If the pCO2 of surface water is in equilibrium with that of the overlying atmosphere, theCO2 deficit linked to organic synthesis induces a diffusion ofCO2 from the atmosphere to the ocean. This is commonly referred to as the organic biological pump.

By consuming dissolvedCO2 and H3O+ ions, the organic synthesis reaction tends to raise the pH of seawater. The pH mapping of surface waters shows high values (8.2-8.4) for coastal zones and high latitudes, while the subtropical " deserts " are characterized by low pH values around 8.

After synthesis, organic matter is rapidly recycled in the photic zone. Nevertheless, a fraction of this organic matter (≈  15 % in the open ocean) escapes at depth via sedimentation in the water column. It is then gradually degraded and remineralized by bacteria living at depth. Vertical pH profiles show a minimum at around 1 to 2 km, corresponding to the maximum of this remineralization. Deep-water masses are transported by the global thermohaline circulation, maintaining a TCO2 and pH gradient between the North Atlantic and the North Pacific (around 0.2 pH units). The acidic, TCO2-laden deep waters then rise to the surface through variousupwelling mechanisms.